Luke, will post links detailing the timing belt removal and installation for your Honda. Check the attached links,instruction and guides, Good luck.
I hope this helped you out, if so let me know by pressing the helpful button.
http://www.hondacivicforum.com/forum/mechanical-problems-technical-chat-8/d15b7-timing-marks-question-confusion-76543/
http://www.clubcivic.com/forum/threads/how-to-timing-belt-d16y5-d16y7-d16y8.17671/
http://www.civicforums.com/forums/115-engine/336873-diy-how-set-your-timing-during-timing-belt-change-head-gasket-replacement.html
http://www.ehow.com/how_6075346_replace-belt-1991-honda-civic.html