There is a free open source obdII ford specific software called forescan https://forscan.org/ Works with USB and Bluetooth obdII interfaces To reprogram keys, you have to register your information in the software, this is to prevent just anyone reprogramming a key and stealing a car.

There is no way to bypass it. As long as the transceiver ring around the ignition lock is not damaged , you can buy a new Ignition lock with 2 keys, and either tow it to ford to have the keys programmed or have a lock smith program them.

There are releases in the engine bay you can turn and pull the whole housing out of the car need to be careful not to rip lens off How To Install Replace Headlight and Bulb Volkswa…: http://youtu.be/ALcVKiHmn9Q

I've used large hose clamps before. Works fine especially if no welder is available !

The hydraulic clutch probably needs bled! http://www.google.com/url?sa=t&rct=j&q=&...